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SLC11A1 solute carrier family 11 member 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100482061, updated on 8-Mar-2024

Summary

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Gene symbol
SLC11A1
Gene description
solute carrier family 11 member 1
Locus tag
PANDA_001555
See related
Ensembl:ENSAMEG00000003017
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See SLC11A1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 2 NC_048219.1 (180460121..180469276)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217317.1 (715690..728627, complement)

Chromosome 2 - NC_048219.1Genomic Context describing neighboring genes Neighboring gene transmembrane BAX inhibitor motif containing 1 Neighboring gene PNKD metallo-beta-lactamase domain containing Neighboring gene ciliogenesis associated TTC17 interacting protein Neighboring gene villin 1 Neighboring gene ubiquitin specific peptidase 37 Neighboring gene CCR4-NOT transcription complex subunit 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadmium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in metal ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
natural resistance-associated macrophage protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048219.1 Reference ASM200744v2 Primary Assembly

    Range
    180460121..180469276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034655169.1 → XP_034511060.1  natural resistance-associated macrophage protein 1 isoform X5

  2. XM_034655166.1 → XP_034511057.1  natural resistance-associated macrophage protein 1 isoform X1

  3. XM_011233705.3 → XP_011232007.1  natural resistance-associated macrophage protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A7N5K559
    Conserved Domains (2) summary
    TIGR01197
    Location:53 → 461
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters
    pfam01566
    Location:75 → 468
    Nramp; Natural resistance-associated macrophage protein

  4. XM_034655167.1 → XP_034511058.1  natural resistance-associated macrophage protein 1 isoform X2

  5. XM_034655168.1 → XP_034511059.1  natural resistance-associated macrophage protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A7N5K559, G1L8L5
    Related
    ENSAMEP00000003234.2, ENSAMET00000003365.2
Nucleotide Protein
Heading Accession and Version

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