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ST3GAL6 ST3 beta-galactoside alpha-2,3-sialyltransferase 6 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100481119, updated on 8-Mar-2024

Summary

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Gene symbol
ST3GAL6
Gene description
ST3 beta-galactoside alpha-2,3-sialyltransferase 6
Locus tag
PANDA_015074
See related
Ensembl:ENSAMEG00000015477
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See ST3GAL6 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 1 NC_048218.1 (44094643..44153907)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218240.1 (491364..551166, complement)

Chromosome 1 - NC_048218.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117801751 Neighboring gene uncharacterized LOC105240342 Neighboring gene discoidin, CUB and LCCL domain containing 2 Neighboring gene uncharacterized LOC117801776 Neighboring gene elongation factor 1-alpha 1-like Neighboring gene small nucleolar RNA SNORA20

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
type 2 lactosamine alpha-2,3-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048218.1 Reference ASM200744v2 Primary Assembly

    Range
    44094643..44153907
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034657236.1 → XP_034513127.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    D2HSL1, G1MAG4

  2. XM_002925506.4 → XP_002925552.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    See identical proteins and their annotated locations for XP_002925552.1

    UniProtKB/TrEMBL
    D2HSL1, G1MAG4
    Related
    ENSAMEP00000016338.2, ENSAMET00000017016.2
    Conserved Domains (1) summary
    pfam00777
    Location:83 → 328
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_034657225.1 → XP_034513116.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    G1MAG4

  4. XM_034657242.1 → XP_034513133.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    D2HSL1, G1MAG4

  5. XM_034657239.1 → XP_034513130.1  type 2 lactosamine alpha-2,3-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    D2HSL1, G1MAG4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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