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PES1 pescadillo ribosomal biogenesis factor 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100480983, updated on 8-Mar-2024

Summary

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Gene symbol
PES1
Gene description
pescadillo ribosomal biogenesis factor 1
Locus tag
PANDA_003622
See related
Ensembl:ENSAMEG00000007417
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See PES1 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
15
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 12 NC_048229.1 (19231131..19246279)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217387.1 (1239596..1254693)

Chromosome 12 - NC_048229.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 35 member E4 Neighboring gene transcobalamin 2 Neighboring gene galactose-3-O-sulfotransferase 1 Neighboring gene SEC14-like protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PeBoW complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pescadillo homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048229.1 Reference ASM200744v2 Primary Assembly

    Range
    19231131..19246279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002915562.4 → XP_002915608.1  pescadillo homolog isoform X1

    UniProtKB/TrEMBL
    A0A7N5K9I3, G1LLM9
    Related
    ENSAMEP00000034715.1, ENSAMET00000029539.1
    Conserved Domains (3) summary
    COG5163
    Location:6 → 571
    NOP7; Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
    pfam06732
    Location:9 → 278
    Pescadillo_N; Pescadillo N-terminus
    pfam16589
    Location:327 → 413
    BRCT_2; BRCT domain, a BRCA1 C-terminus domain

  2. XM_034637911.1 → XP_034493802.1  pescadillo homolog isoform X2

    UniProtKB/TrEMBL
    G1LLM9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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