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VCAM1 vascular cell adhesion molecule 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100480380, updated on 8-Mar-2024

Summary

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Gene symbol
VCAM1
Gene description
vascular cell adhesion molecule 1
Locus tag
PANDA_018117
See related
Ensembl:ENSAMEG00000009597
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See VCAM1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 2 NC_048219.1 (69728729..69747580)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218737.1 (86975..105823)

Chromosome 2 - NC_048219.1Genomic Context describing neighboring genes Neighboring gene cell division cycle 14A Neighboring gene G protein-coupled receptor 88 Neighboring gene receptor of activated protein C kinase 1-like Neighboring gene exostosin like glycosyltransferase 2 Neighboring gene solute carrier family 30 member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vascular cell adhesion protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048219.1 Reference ASM200744v2 Primary Assembly

    Range
    69728729..69747580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011235991.3 → XP_011234293.1  vascular cell adhesion protein 1 isoform X2

    UniProtKB/TrEMBL
    D2HZ91
    Conserved Domains (5) summary
    cd07689
    Location:413 → 511
    Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:247 → 307
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:330 → 407
    IG_like; Immunoglobulin like
    pfam07679
    Location:35 → 121
    I-set; Immunoglobulin I-set domain
    cl11960
    Location:39 → 107
    Ig; Immunoglobulin domain

  2. XM_002928153.4 → XP_002928199.1  vascular cell adhesion protein 1 isoform X1

    UniProtKB/TrEMBL
    D2HZ91, G1LSS1
    Related
    ENSAMEP00000010112.2, ENSAMET00000010552.2
    Conserved Domains (6) summary
    cd07689
    Location:413 → 511
    Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
    smart00408
    Location:247 → 307
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:330 → 407
    IG_like; Immunoglobulin like
    pfam07679
    Location:35 → 121
    I-set; Immunoglobulin I-set domain
    pfam13927
    Location:615 → 681
    Ig_3; Immunoglobulin domain
    cl11960
    Location:39 → 107
    Ig; Immunoglobulin domain
Nucleotide Protein
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