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CNTN6 contactin 6 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100480230, updated on 8-Mar-2024

Summary

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Gene symbol
CNTN6
Gene description
contactin 6
Locus tag
PANDA_004018
See related
Ensembl:ENSAMEG00000014259
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See CNTN6 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 4 NC_048221.1 (41934277..42204218)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217402.1 (145078..360045)

Chromosome 4 - NC_048221.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene cell adhesion molecule L1 like Neighboring gene atlastin-1-like Neighboring gene rRNA-processing protein FCF1 homolog Neighboring gene 40S ribosomal protein SA-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: contactin-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048221.1 Reference ASM200744v2 Primary Assembly

    Range
    41934277..42204218
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011220649.3 → XP_011218951.3  LOW QUALITY PROTEIN: contactin-6

    UniProtKB/TrEMBL
    G1M722
    Related
    ENSAMEP00000015142.2, ENSAMET00000015764.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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