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VCAN versican [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100476923, updated on 8-Mar-2024

Summary

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Gene symbol
VCAN
Gene description
versican
Locus tag
PANDA_017569
See related
Ensembl:ENSAMEG00000007464
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See VCAN in Genome Data Viewer
Location:
chromosome: 3
Exon count:
16
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 3 NC_048220.1 (57610775..57718570)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218615.1 (220334..328307)

Chromosome 3 - NC_048220.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U109 Neighboring gene transmembrane protein 167A Neighboring gene X-ray repair cross complementing 4 Neighboring gene hyaluronan and proteoglycan link protein 1 Neighboring gene uncharacterized LOC117801405

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hyaluronic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
versican core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048220.1 Reference ASM200744v2 Primary Assembly

    Range
    57610775..57718570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034656465.1 → XP_034512356.1  versican core protein isoform X1

    UniProtKB/TrEMBL
    D2HY16, G1LLT6
    Related
    ENSAMEP00000007910.2, ENSAMET00000008239.2

  2. XM_019808441.2 → XP_019664000.2  versican core protein isoform X2

    UniProtKB/TrEMBL
    D2HY16

  3. XM_034656466.1 → XP_034512357.1  versican core protein isoform X3

    UniProtKB/TrEMBL
    A0A7N5K500
    Related
    ENSAMEP00000034998.1, ENSAMET00000040372.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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