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B3GALT4 beta-1,3-galactosyltransferase 4 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100474436, updated on 8-Mar-2024

Summary

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Gene symbol
B3GALT4
Gene description
beta-1,3-galactosyltransferase 4
Locus tag
PANDA_002274
See related
Ensembl:ENSAMEG00000019752
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See B3GALT4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 5 NC_048222.1 (28473024..28475124)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217336.1 (3138251..3139741, complement)

Chromosome 5 - NC_048222.1Genomic Context describing neighboring genes Neighboring gene ring finger protein 1 Neighboring gene VPS52 subunit of GARP complex Neighboring gene ribosomal protein S18 Neighboring gene WD repeat domain 46 Neighboring gene prefoldin subunit 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048222.1 Reference ASM200744v2 Primary Assembly

    Range
    28473024..28475124
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019794219.2 → XP_019649778.1  beta-1,3-galactosyltransferase 4

    UniProtKB/TrEMBL
    D2GZ00

  2. XM_002914331.4 → XP_002914377.1  beta-1,3-galactosyltransferase 4

    See identical proteins and their annotated locations for XP_002914377.1

    UniProtKB/TrEMBL
    D2GZ00
    Related
    ENSAMEP00000020805.1, ENSAMET00000021574.2
    Conserved Domains (1) summary
    cl21608
    Location:85 → 314
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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