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NCBP1 nuclear cap binding protein subunit 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100472655, updated on 8-Mar-2024

Summary

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Gene symbol
NCBP1
Gene description
nuclear cap binding protein subunit 1
Locus tag
PANDA_002924
See related
Ensembl:ENSAMEG00000004763
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See NCBP1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
23
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 7 NC_048224.1 (28012243..28050570)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217357.1 (2075925..2112975, complement)

Chromosome 7 - NC_048224.1Genomic Context describing neighboring genes Neighboring gene tudor domain containing 7 Neighboring gene tropomodulin 1 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene forkhead box E1 Neighboring gene tRNA methyltransferase O

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear cap binding complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear cap-binding protein subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048224.1 Reference ASM200744v2 Primary Assembly

    Range
    28012243..28050570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002914933.4 → XP_002914979.2  nuclear cap-binding protein subunit 1 isoform X1

    UniProtKB/TrEMBL
    D2H0H3, G1LDU0
    Related
    ENSAMEP00000005072.2, ENSAMET00000005280.2

  2. XM_011219343.3 → XP_011217645.2  nuclear cap-binding protein subunit 1 isoform X2

    UniProtKB/TrEMBL
    D2H0H3

  3. XM_034664160.1 → XP_034520051.1  nuclear cap-binding protein subunit 1 isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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