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OAT ornithine aminotransferase [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100472295, updated on 8-Mar-2024

Summary

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Gene symbol
OAT
Gene description
ornithine aminotransferase
Locus tag
PANDA_016994
See related
Ensembl:ENSAMEG00000010160
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See OAT in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 6 NC_048223.1 (122255718..122276244, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218518.1 (64144..84204)

Chromosome 6 - NC_048223.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC117802769 Neighboring gene uncharacterized LOC117802770 Neighboring gene NK1 homeobox 2 Neighboring gene phospholysine phosphohistidine inorganic pyrophosphate phosphatase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ornithine aminotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginine catabolic process to glutamate IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in arginine catabolic process to proline via ornithine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ornithine aminotransferase, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048223.1 Reference ASM200744v2 Primary Assembly

    Range
    122255718..122276244 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034663400.1 → XP_034519291.1  ornithine aminotransferase, mitochondrial

    UniProtKB/TrEMBL
    D2HWR8
    Related
    ENSAMEP00000010694.1, ENSAMET00000011154.2
Nucleotide Protein
Heading Accession and Version

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