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ACER1 alkaline ceramidase 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100471144, updated on 8-Mar-2024

Summary

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Gene symbol
ACER1
Gene description
alkaline ceramidase 1
Locus tag
PANDA_017638
See related
Ensembl:ENSAMEG00000023660
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See ACER1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 4 NC_048221.1 (4500414..4520056, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218630.1 (211017..230512, complement)

Chromosome 4 - NC_048221.1Genomic Context describing neighboring genes Neighboring gene long-chain-fatty-acid--CoA ligase ACSBG2 Neighboring gene MLLT1 super elongation complex subunit Neighboring gene caseinolytic mitochondrial matrix peptidase proteolytic subunit Neighboring gene alkB homolog 7 Neighboring gene persephin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alkaline ceramidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048221.1 Reference ASM200744v2 Primary Assembly

    Range
    4500414..4520056 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002927760.4 → XP_002927806.1  alkaline ceramidase 1

    See identical proteins and their annotated locations for XP_002927806.1

    UniProtKB/TrEMBL
    D2HY69
    Related
    ENSAMEP00000034853.1, ENSAMET00000044315.1
    Conserved Domains (1) summary
    pfam05875
    Location:3 → 255
    Ceramidase; Ceramidase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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