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SDC1 syndecan 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100471083, updated on 8-Mar-2024

Summary

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Gene symbol
SDC1
Gene description
syndecan 1
Locus tag
PANDA_002990
See related
Ensembl:ENSAMEG00000002804
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See SDC1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
5
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 4 NC_048221.1 (129239639..129263255)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217360.1 (2698082..2719545, complement)

Chromosome 4 - NC_048221.1Genomic Context describing neighboring genes Neighboring gene b(0,+)-type amino acid transporter 1 Neighboring gene pumilio RNA binding family member 2 Neighboring gene U6 spliceosomal RNA Neighboring gene lysosomal protein transmembrane 4 alpha Neighboring gene matrilin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048221.1 Reference ASM200744v2 Primary Assembly

    Range
    129239639..129263255
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034659868.1 → XP_034515759.1  syndecan-1

    UniProtKB/TrEMBL
    D2H0M7, G1L7U3
    Related
    ENSAMEP00000002959.2, ENSAMET00000003084.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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