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ALOX12 arachidonate 12-lipoxygenase, 12S type [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100471037, updated on 8-Mar-2024

Summary

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Gene symbol
ALOX12
Gene description
arachidonate 12-lipoxygenase, 12S type
Locus tag
PANDA_013827
See related
Ensembl:ENSAMEG00000015919
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See ALOX12 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
15
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 17 NC_048234.1 (1898039..1910268)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218096.1 (263857..275325)

Chromosome 17 - NC_048234.1Genomic Context describing neighboring genes Neighboring gene arachidonate 15-lipoxygenase Neighboring gene MICOS complex subunit MIC26-like Neighboring gene elongation factor 1-alpha 1-like Neighboring gene uncharacterized LOC117796936 Neighboring gene ribonuclease K Neighboring gene BPTF associated chromatin complex component 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate 12(S)-lipoxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables arachidonate 15-lipoxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables linoleate 13S-lipoxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in linoleic acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyunsaturated fatty acid lipoxygenase ALOX12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048234.1 Reference ASM200744v2 Primary Assembly

    Range
    1898039..1910268
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034646867.1 → XP_034502758.1  polyunsaturated fatty acid lipoxygenase ALOX12 isoform X1

    UniProtKB/TrEMBL
    A0A7N5KJ18, D2HPT6
    Related
    ENSAMEP00000040821.1, ENSAMET00000033808.1

  2. XM_034646868.1 → XP_034502759.1  polyunsaturated fatty acid lipoxygenase ALOX12 isoform X2

    UniProtKB/TrEMBL
    D2HPT6

  3. XM_034646869.1 → XP_034502760.1  polyunsaturated fatty acid lipoxygenase ALOX12 isoform X3

    UniProtKB/TrEMBL
    D2HPT6, G1MBU3
    Related
    ENSAMEP00000016821.2, ENSAMET00000017512.2
Nucleotide Protein
Heading Accession and Version

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