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PLA2G4D phospholipase A2 group IVD [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100470240, updated on 8-Mar-2024

Summary

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Gene symbol
PLA2G4D
Gene description
phospholipase A2 group IVD
Locus tag
PANDA_001041
See related
Ensembl:ENSAMEG00000016313
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See PLA2G4D in Genome Data Viewer
Location:
chromosome: 5
Exon count:
22
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 5 NC_048222.1 (62760326..62789397)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217306.1 (2351819..2375020)

Chromosome 5 - NC_048222.1Genomic Context describing neighboring genes Neighboring gene VPS39 subunit of HOPS complex Neighboring gene phospholipase A2 group IVF Neighboring gene phospholipase A2 group IVE Neighboring gene EH domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipase A2 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic phospholipase A2 delta

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048222.1 Reference ASM200744v2 Primary Assembly

    Range
    62760326..62789397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034661104.1 → XP_034516995.1  cytosolic phospholipase A2 delta isoform X2

    UniProtKB/TrEMBL
    D2GW77

  2. XM_019801959.2 → XP_019657518.1  cytosolic phospholipase A2 delta isoform X3

  3. XM_002913249.4 → XP_002913295.1  cytosolic phospholipase A2 delta isoform X1

    UniProtKB/TrEMBL
    G1MD18
    Related
    ENSAMEP00000017246.2, ENSAMET00000017953.2
    Conserved Domains (3) summary
    cd04036
    Location:23 → 142
    C2_cPLA2; C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)
    smart00022
    Location:258 → 748
    PLAc; Cytoplasmic phospholipase A2, catalytic subunit
    cl11396
    Location:270 → 806
    Patatin_and_cPLA2; Patatins and Phospholipases

  4. XM_034661105.1 → XP_034516996.1  cytosolic phospholipase A2 delta isoform X3

Nucleotide Protein
Heading Accession and Version

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