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TMTC3 transmembrane O-mannosyltransferase targeting cadherins 3 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100470110, updated on 8-Mar-2024

Summary

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Gene symbol
TMTC3
Gene description
transmembrane O-mannosyltransferase targeting cadherins 3
Locus tag
PANDA_010649
See related
Ensembl:ENSAMEG00000002347
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See TMTC3 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
14
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 15 NC_048232.1 (59650260..59702818)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217798.1 (663860..714310, complement)

Chromosome 15 - NC_048232.1Genomic Context describing neighboring genes Neighboring gene RNA 5'-phosphate and 3'-OH ligase 1 Neighboring gene centrosomal protein 290 Neighboring gene KIT ligand Neighboring gene uncharacterized LOC117796373

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC3
Names
transmembrane and tetratricopeptide repeat containing 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048232.1 Reference ASM200744v2 Primary Assembly

    Range
    59650260..59702818
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034643545.1 → XP_034499436.1  protein O-mannosyl-transferase TMTC3

    UniProtKB/TrEMBL
    D2HHQ0, G1L6E6
    Related
    ENSAMEP00000002461.2, ENSAMET00000002566.2

  2. XM_019802250.2 → XP_019657809.1  protein O-mannosyl-transferase TMTC3

    UniProtKB/TrEMBL
    D2HHQ0, G1L6E6

  3. XM_011228057.3 → XP_011226359.1  protein O-mannosyl-transferase TMTC3

    See identical proteins and their annotated locations for XP_011226359.1

    UniProtKB/TrEMBL
    D2HHQ0, G1L6E6
    Conserved Domains (7) summary
    sd00006
    Location:530 → 557
    TPR; TPR repeat [structural motif]
    cd15832
    Location:544 → 595
    SNAP; TPR repeat [structural motif]
    pfam00515
    Location:597 → 630
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:258 → 331
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:564 → 628
    TPR_11; TPR repeat
    pfam13424
    Location:593 → 697
    TPR_12; Tetratricopeptide repeat
    cl24038
    Location:542 → 772
    SNAP; Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family
Nucleotide Protein
Heading Accession and Version

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