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NSUN4 NOP2/Sun RNA methyltransferase 4 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100469672, updated on 8-Mar-2024

Summary

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Gene symbol
NSUN4
Gene description
NOP2/Sun RNA methyltransferase 4
Locus tag
PANDA_008148
See related
Ensembl:ENSAMEG00000013949
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See NSUN4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 2 NC_048219.1 (22465592..22483795)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217625.1 (1276140..1293668)

Chromosome 2 - NC_048219.1Genomic Context describing neighboring genes Neighboring gene RAD54 like Neighboring gene leucine rich repeat containing 41 Neighboring gene cytochrome b-c1 complex subunit 6, mitochondrial Neighboring gene fatty acid amide hydrolase Neighboring gene vitamin D3 hydroxylase-associated protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5-methylcytosine rRNA methyltransferase NSUN4
Names
NOP2/Sun RNA methyltransferase family member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048219.1 Reference ASM200744v2 Primary Assembly

    Range
    22465592..22483795
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002919463.4 → XP_002919509.1  5-methylcytosine rRNA methyltransferase NSUN4 isoform X2

    UniProtKB/TrEMBL
    D2HC53, G1M5U1
    Related
    ENSAMEP00000014709.1, ENSAMET00000015316.2
    Conserved Domains (1) summary
    cl17173
    Location:166 → 322
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_019799912.2 → XP_019655471.1  5-methylcytosine rRNA methyltransferase NSUN4 isoform X1

    UniProtKB/TrEMBL
    D2HC53
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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