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ATRN attractin [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100468329, updated on 8-Mar-2024

Summary

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Gene symbol
ATRN
Gene description
attractin
Locus tag
PANDA_007354
See related
Ensembl:ENSAMEG00000010900
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See ATRN in Genome Data Viewer
Location:
chromosome: 13
Exon count:
32
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 13 NC_048230.1 (74461966..74613018)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217578.1 (380997..530276, complement)

Chromosome 13 - NC_048230.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal assembly factor 9 Neighboring gene small nucleolar RNA U3 Neighboring gene uncharacterized LOC105237436 Neighboring gene GDNF family receptor alpha 4 Neighboring gene ADAM metallopeptidase domain 33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048230.1 Reference ASM200744v2 Primary Assembly

    Range
    74461966..74613018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034640969.1 → XP_034496860.1  attractin isoform X2

    UniProtKB/TrEMBL
    A0A7N5K477, D2HAB7
    Related
    ENSAMEP00000034464.1, ENSAMET00000044423.1

  2. XM_034640970.1 → XP_034496861.1  attractin isoform X3

    UniProtKB/TrEMBL
    A0A7N5JWU0, D2HAB7
    Related
    ENSAMEP00000031650.1, ENSAMET00000034683.1

  3. XM_034640968.1 → XP_034496859.1  attractin isoform X1

    UniProtKB/TrEMBL
    D2HAB7, G1LWR6

  4. XM_034640971.1 → XP_034496862.1  attractin isoform X4

    UniProtKB/TrEMBL
    D2HAB7

  5. XM_034640966.1 → XP_034496857.1  attractin isoform X1

    UniProtKB/TrEMBL
    D2HAB7, G1LWR6
    Related
    ENSAMEP00000011519.2, ENSAMET00000012010.2

  6. XM_034640967.1 → XP_034496858.1  attractin isoform X1

    UniProtKB/TrEMBL
    D2HAB7, G1LWR6
Nucleotide Protein
Heading Accession and Version

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