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PIGC phosphatidylinositol glycan anchor biosynthesis class C [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100467984, updated on 8-Mar-2024

Summary

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Gene symbol
PIGC
Gene description
phosphatidylinositol glycan anchor biosynthesis class C
Locus tag
PANDA_005146
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See PIGC in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 8 NC_048225.1 (76383035..76385758, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217455.1 (378763..381237, complement)

Chromosome 8 - NC_048225.1Genomic Context describing neighboring genes Neighboring gene dynamin 3 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC105236577 Neighboring gene chromosome 8 C1orf105 homolog Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC109489261

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol N-acetylglucosaminyltransferase subunit C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048225.1 Reference ASM200744v2 Primary Assembly

    Range
    76383035..76385758 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_034666744.1 → XP_034522635.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit C

    UniProtKB/TrEMBL
    D2H5H3, G1MNC0

  2. XM_034666748.1 → XP_034522639.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit C

    UniProtKB/TrEMBL
    D2H5H3, G1MNC0

  3. XM_034666745.1 → XP_034522636.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit C

    UniProtKB/TrEMBL
    D2H5H3, G1MNC0

  4. XM_002916945.4 → XP_002916991.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit C

    See identical proteins and their annotated locations for XP_002916991.1

    UniProtKB/TrEMBL
    D2H5H3, G1MNC0
    Conserved Domains (1) summary
    pfam06432
    Location:14 → 284
    GPI2; Phosphatidylinositol N-acetylglucosaminyltransferase

  5. XM_034666747.1 → XP_034522638.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit C

    UniProtKB/TrEMBL
    D2H5H3, G1MNC0

  6. XM_034666746.1 → XP_034522637.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit C

    UniProtKB/TrEMBL
    D2H5H3, G1MNC0
Nucleotide Protein
Heading Accession and Version

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