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GNPDA2 glucosamine-6-phosphate deaminase 2 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100466585, updated on 8-Mar-2024

Summary

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Gene symbol
GNPDA2
Gene description
glucosamine-6-phosphate deaminase 2
Locus tag
PANDA_010716
See related
Ensembl:ENSAMEG00000016070
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See GNPDA2 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 11 NC_048228.1 (74350289..74375043)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217806.1 (1107889..1133150)

Chromosome 11 - NC_048228.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L12-like Neighboring gene profilin-1-like Neighboring gene GTP binding elongation factor GUF1 Neighboring gene Yip1 domain family member 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosamine-6-phosphate deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucosamine-6-phosphate isomerase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048228.1 Reference ASM200744v2 Primary Assembly

    Range
    74350289..74375043
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002921755.4 → XP_002921801.1  glucosamine-6-phosphate isomerase 2

    See identical proteins and their annotated locations for XP_002921801.1

    UniProtKB/TrEMBL
    A0A7N5P203, D2HHV4
    Related
    ENSAMEP00000027176.1, ENSAMET00000037170.1
    Conserved Domains (1) summary
    cl00339
    Location:1 → 253
    SugarP_isomerase; Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose ...
Nucleotide Protein
Heading Accession and Version

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