U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SMG8 SMG8 nonsense mediated mRNA decay factor [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100466348, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SMG8
Gene description
SMG8 nonsense mediated mRNA decay factor
Locus tag
PANDA_012498
See related
Ensembl:ENSAMEG00000011619
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SMG8 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
4
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 13 NC_048230.1 (13539335..13544427, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217972.1 (735608..740653, complement)

Chromosome 13 - NC_048230.1Genomic Context describing neighboring genes Neighboring gene yippee like 2 Neighboring gene glycerophosphodiester phosphodiesterase domain containing 1 Neighboring gene proline rich 11 Neighboring gene tripartite motif containing 37 Neighboring gene protein phosphatase, Mg2+/Mn2+ dependent 1E

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein SMG8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048230.1 Reference ASM200744v2 Primary Assembly

    Range
    13539335..13544427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002923324.4 → XP_002923370.1  protein SMG8

    See identical proteins and their annotated locations for XP_002923370.1

    UniProtKB/TrEMBL
    A0A7N5J849, D2HLV2
    Related
    ENSAMEP00000012215.1, ENSAMET00000012733.2
    Conserved Domains (1) summary
    pfam10220
    Location:44 → 985
    DUF2146; Uncharacterized conserved protein (DUF2146)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.