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RTN4RL1 reticulon 4 receptor like 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100466327, updated on 8-Mar-2024

Summary

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Gene symbol
RTN4RL1
Gene description
reticulon 4 receptor like 1
Locus tag
PANDA_006468
See related
Ensembl:ENSAMEG00000018472
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See RTN4RL1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 13 NC_048230.1 (1639460..1707163)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217523.1 (914858..981505)

Chromosome 13 - NC_048230.1Genomic Context describing neighboring genes Neighboring gene HIC ZBTB transcriptional repressor 1 Neighboring gene OVCA2 serine hydrolase domain containing Neighboring gene diphthamide biosynthesis 1 Neighboring gene replication protein A1 Neighboring gene pre-B-cell leukemia transcription factor 2-like Neighboring gene SET and MYND domain containing 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
reticulon-4 receptor-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048230.1 Reference ASM200744v2 Primary Assembly

    Range
    1639460..1707163
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011223410.3 → XP_011221712.1  reticulon-4 receptor-like 1

    UniProtKB/TrEMBL
    D2H8B7, G1MJJ1
    Related
    ENSAMEP00000019526.2, ENSAMET00000020295.2
    Conserved Domains (4) summary
    cd00116
    Location:102 → 255
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:78 → 101
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:150 → 188
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:174 → 233
    LRR_8; Leucine rich repeat

RNA

  1. XR_004619920.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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