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CHI3L1 chitinase 3 like 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100463596, updated on 8-Mar-2024

Summary

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Gene symbol
CHI3L1
Gene description
chitinase 3 like 1
Locus tag
PANDA_015006
See related
Ensembl:ENSAMEG00000012357
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See CHI3L1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
10
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 8 NC_048225.1 (102750811..102759906, complement)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003218226.1 (669524..678595, complement)

Chromosome 8 - NC_048225.1Genomic Context describing neighboring genes Neighboring gene myogenin Neighboring gene adenosine A1 receptor Neighboring gene myosin binding protein H Neighboring gene chitinase 1 Neighboring gene uncharacterized LOC117803456

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chitin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitinase-3-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048225.1 Reference ASM200744v2 Primary Assembly

    Range
    102750811..102759906 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011232612.3 → XP_011230914.2  chitinase-3-like protein 1

    UniProtKB/TrEMBL
    D2HSF1, G1M115
    Related
    ENSAMEP00000013026.2, ENSAMET00000013573.2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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