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eIF4A eukaryotic translation initiation factor 4A [ Tribolium castaneum (red flour beetle) ]

Gene ID: 100463502, updated on 10-May-2024

Summary

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Gene symbol
eIF4A
Gene description
eukaryotic translation initiation factor 4A
Locus tag
TcasGA2_TC014113
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Also known as
eIF-4a
Orthologs
fruit fly all
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Genomic context

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See eIF4A in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 5 NC_087398.1 (9575355..9579729, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG5 NC_007420.3 (5761052..5765631)

Chromosome 5 - NC_087398.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC659317 Neighboring gene P-granule-associated novel protein 1 Neighboring gene chickadee Neighboring gene hypothetical protein Neighboring gene kinesin 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of transcriptome data in the red flour beetle, Tribolium castaneum. Park Y, et al. Insect Biochem Mol Biol, 2008 Apr. PMID 18342244, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
eukaryotic initiation factor 4a
Names
AUGUSTUS-3.0.2_14113
Eukaryotic initiation factor 4A-like Protein
GLEAN_14113

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190719.1 → NP_001177648.1  eukaryotic initiation factor 4a

    See identical proteins and their annotated locations for NP_001177648.1

    Status: VALIDATED

    Source sequence(s)
    DN647198, ES545172, ES552715, ES554172
    UniProtKB/TrEMBL
    D6WKA5
    Conserved Domains (3) summary
    PTZ00424
    Location:34 → 419
    PTZ00424; helicase 45; Provisional
    cd00268
    Location:48 → 248
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam00271
    Location:270 → 374
    Helicase_C; Helicase conserved C-terminal domain

RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087398.1 Reference icTriCast1.1 Primary Assembly

    Range
    9575355..9579729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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