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SC5D sterol-C5-desaturase [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100459805, updated on 6-Jun-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
Locus tag
CR201_G0005934
See related
Ensembl:ENSPPYG00000003980
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Also known as
SC5DL
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 9 NC_071994.2 (124513336..124529333)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 11 NC_071996.1 (120947405..120963369)

Chromosome 9 - NC_071994.2Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor kainate type subunit 4 Neighboring gene uncharacterized LOC129048801 Neighboring gene tubulin-specific chaperone cofactor E-like protein Neighboring gene uncharacterized LOC134762107 Neighboring gene sortilin related receptor 1 Neighboring gene transfer RNA lysine (anticodon UUU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables C-5 sterol desaturase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase
Names
sterol-C5-desaturase (ERG3 delta-5-desaturase homolog, S. cerevisiae)-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071994.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    124513336..124529333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002822599.5 → XP_002822645.2  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A6D2XAC7, A0A8I5U0G4

  2. XM_002822598.4 → XP_002822644.2  lathosterol oxidase

    UniProtKB/TrEMBL
    A0A6D2XAC7, A0A8I5U0G4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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