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CLEC12B C-type lectin domain family 12 member B [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100455809, updated on 10-Oct-2024

Summary

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Gene symbol
CLEC12B
Gene description
C-type lectin domain family 12 member B
Locus tag
CR201_G0051067
See related
Ensembl:ENSPPYG00000035311
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See CLEC12B in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 10 NC_071995.2 (10478844..10496509)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 12 NC_071997.1 (10479714..10497375)

Chromosome 10 - NC_071995.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene C-type lectin domain family 1 member B Neighboring gene C-type lectin domain family 1 member B-like Neighboring gene C-type lectin domain containing 9A Neighboring gene C-type lectin domain family 1 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables signaling receptor regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in natural killer cell inhibitory signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 12 member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071995.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    10478844..10496509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002822897.4 → XP_002822943.1  C-type lectin domain family 12 member B

    UniProtKB/TrEMBL
    A0A2J8RGP3, A0A2J8RGS6, A0A8I5YM33
    Related
    ENSPPYP00000025863.1
    Conserved Domains (1) summary
    cd03593
    Location:143 → 265
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_063712023.1 → XP_063568093.1  C-type lectin domain family 12 member B

    UniProtKB/TrEMBL
    A0A2J8RGP3, A0A8I5YM33
Nucleotide Protein
Heading Accession and Version

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Research Materials