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CLEC1B C-type lectin domain family 1 member B [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100455191, updated on 26-Mar-2024

Summary

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Gene symbol
CLEC1B
Gene description
C-type lectin domain family 1 member B
Locus tag
CR201_G0051068
See related
Ensembl:ENSPPYG00000004263
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See CLEC1B in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 10 NC_071995.2 (10467713..10476538, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 12 NC_071997.1 (10468583..10477408, complement)

Chromosome 10 - NC_071995.2Genomic Context describing neighboring genes Neighboring gene C-type lectin domain family 2 member A Neighboring gene C-type lectin domain family 12 member A Neighboring gene small nucleolar RNA U13 Neighboring gene C-type lectin domain family 12 member B Neighboring gene C-type lectin domain family 1 member B-like Neighboring gene C-type lectin domain containing 9A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in platelet formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 1 member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071995.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    10467713..10476538 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002822895.3 → XP_002822941.1  C-type lectin domain family 1 member B isoform X1

    UniProtKB/TrEMBL
    A0A2J8RGP6, A0A663DHX7, H2NGH1
    Related
    ENSPPYP00000004862.1
    Conserved Domains (1) summary
    cd03593
    Location:102 → 218
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

  2. XM_054526807.1 → XP_054382782.1  C-type lectin domain family 1 member B isoform X2

    UniProtKB/TrEMBL
    A0A2J8RGP8, A0A8I5TYD0
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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