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ZNF12 zinc finger protein 12 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100447806, updated on 26-Mar-2024

Summary

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Gene symbol
ZNF12
Gene description
zinc finger protein 12
Locus tag
CR201_G0053865
See related
Ensembl:ENSPPYG00000030303
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See ZNF12 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 6 NC_071991.2 (7159034..7177379, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 7 NC_071992.1 (1148223..1166362, complement)

Chromosome 6 - NC_071991.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 316 Neighboring gene uncharacterized LOC129060575 Neighboring gene speedy protein E18-like Neighboring gene mismatch repair endonuclease PMS2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071991.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    7159034..7177379 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002817694.6 → XP_002817740.4  zinc finger protein 12

    UniProtKB/TrEMBL
    A0A6D2WUL8, A0A8I5TP86
    Related
    ENSPPYP00000038951.1
    Conserved Domains (4) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:307 → 683
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:287 → 306
    zf-H2C2_2; Zinc-finger double domain

  2. XM_024250023.3 → XP_024105791.1  zinc finger protein 12

    UniProtKB/TrEMBL
    A0A6D2WUL8, A0A8I5TP86
    Conserved Domains (4) summary
    smart00349
    Location:8 → 68
    KRAB; krueppel associated box
    COG5048
    Location:307 → 683
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:327 → 347
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:287 → 306
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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