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ACSS1 acyl-CoA synthetase short chain family member 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100447783, updated on 26-Mar-2024

Summary

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Gene symbol
ACSS1
Gene description
acyl-CoA synthetase short chain family member 1
Locus tag
CR201_G0046659
See related
Ensembl:ENSPPYG00000010781
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See ACSS1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 21 NC_072006.2 (20434846..20489445, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 20 NC_072005.1 (20458510..20513106, complement)

Chromosome 21 - NC_072006.2Genomic Context describing neighboring genes Neighboring gene cystatin F Neighboring gene U6 spliceosomal RNA Neighboring gene adipocyte plasma membrane associated protein Neighboring gene visual system homeobox 1 Neighboring gene uncharacterized LOC103888767

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables AMP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables acetate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process from acetate IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetyl-coenzyme A synthetase 2-like, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072006.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    20434846..20489445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054541653.2 → XP_054397628.1  acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X2

  2. XM_024238604.3 → XP_024094372.2  acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X1

  3. XM_054541655.2 → XP_054397630.1  acetyl-coenzyme A synthetase 2-like, mitochondrial isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials