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SDF2 stromal cell derived factor 2 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100447514, updated on 3-Apr-2024

Summary

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Gene symbol
SDF2
Gene description
stromal cell derived factor 2
Locus tag
CR201_G0033516
See related
Ensembl:ENSPPYG00000008104
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See SDF2 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 19 NC_072004.2 (42749890..42761371, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 17 NC_072002.1 (44220430..44231913, complement)

Chromosome 19 - NC_072004.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112129639 Neighboring gene ribosomal protein S6 kinase related Neighboring gene bridge-like lipid transfer protein family member 2 Neighboring gene uncharacterized LOC129051317 Neighboring gene SPT6 homolog, histone chaperone and transcription elongation factor Neighboring gene protein interacting with cyclin A1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
stromal cell-derived factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072004.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    42749890..42761371 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063718566.1 → XP_063574636.1  stromal cell-derived factor 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8TMN4, A0A663DAE4, H2NT44

  2. XM_009251431.4 → XP_009249706.1  stromal cell-derived factor 2 isoform X1

    Conserved Domains (1) summary
    smart00472
    Location:83 → 157
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases

  3. XM_054536555.2 → XP_054392530.1  stromal cell-derived factor 2 isoform X3

Nucleotide Protein
Heading Accession and Version

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