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TMTC1 transmembrane O-mannosyltransferase targeting cadherins 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100446002, updated on 10-Oct-2024

Summary

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Gene symbol
TMTC1
Gene description
transmembrane O-mannosyltransferase targeting cadherins 1
Locus tag
CR201_G0011463
See related
Ensembl:ENSPPYG00000004392
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See TMTC1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 10 NC_071995.2 (30811612..31097178, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 12 NC_071997.1 (30816726..31098047, complement)

Chromosome 10 - NC_071995.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129049091 Neighboring gene ovochymase 1 Neighboring gene uncharacterized LOC129049092 Neighboring gene uncharacterized LOC129049093 Neighboring gene importin 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC1
Names
transmembrane and tetratricopeptide repeat containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071995.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    30811612..31097178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024256984.3 → XP_024112752.1  protein O-mannosyl-transferase TMTC1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8WBY9, A0A2J8WC27, A0A8I5U921
    Related
    ENSPPYP00000025870.1
    Conserved Domains (3) summary
    sd00006
    Location:582 → 610
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:313 → 365
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:469 → 875
    TPR_11; TPR repeat

  2. XM_009247587.4 → XP_009245862.2  protein O-mannosyl-transferase TMTC1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8WC00, A0A8I5TG71, H2NGW7
    Related
    ENSPPYP00000005013.3
    Conserved Domains (3) summary
    sd00006
    Location:644 → 672
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:354 → 427
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:531 → 937
    TPR_11; TPR repeat

  3. XM_054527036.2 → XP_054383011.1  protein O-mannosyl-transferase TMTC1 isoform X4

  4. XM_024256982.3 → XP_024112750.1  protein O-mannosyl-transferase TMTC1 isoform X2

    UniProtKB/TrEMBL
    A0A8I5TG71
    Conserved Domains (3) summary
    sd00006
    Location:588 → 616
    TPR; TPR repeat [structural motif]
    pfam08409
    Location:354 → 427
    DUF1736; Domain of unknown function (DUF1736)
    cl26002
    Location:502 → 881
    TPR_11; TPR repeat

  5. XM_054527037.2 → XP_054383012.1  protein O-mannosyl-transferase TMTC1 isoform X5

Nucleotide Protein
Heading Accession and Version

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