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SF3B5 splicing factor 3b subunit 5 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100445321, updated on 26-Mar-2024

Summary

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Gene symbol
SF3B5
Gene description
splicing factor 3b subunit 5
Locus tag
CR201_G0003821
See related
Ensembl:ENSPPYG00000017068
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See SF3B5 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 5 NC_071990.2 (145657102..145659380, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 6 NC_071991.1 (145079023..145081301, complement)

Chromosome 5 - NC_071990.2Genomic Context describing neighboring genes Neighboring gene zinc finger C2HC-type containing 1B Neighboring gene PLAG1 like zinc finger 1 Neighboring gene uncharacterized LOC129060095 Neighboring gene syntaxin 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071990.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    145657102..145659380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002817451.5 → XP_002817497.1  splicing factor 3B subunit 5

    See identical proteins and their annotated locations for XP_002817497.1

    UniProtKB/TrEMBL
    A0A2J8X9Y8, A0A663DEL3, H2PKI5
    Related
    ENSPPYP00000019113.1
    Conserved Domains (1) summary
    pfam07189
    Location:3 → 77
    SF3b10; Splicing factor 3B subunit 10 (SF3b10)
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials