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SPATA16 spermatogenesis associated 16 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100445168, updated on 26-Mar-2024

Summary

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Gene symbol
SPATA16
Gene description
spermatogenesis associated 16
Locus tag
CR201_G0034751
See related
Ensembl:ENSPPYG00000014306
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See SPATA16 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 2 NC_085928.1 (182845107..183104004, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 3 NC_071988.1 (170631343..170884152, complement)

Chromosome 2 - NC_085928.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA72 Neighboring gene ATP synthase F(0) complex subunit C1, mitochondrial-like Neighboring gene epithelial cell transforming 2 Neighboring gene small nucleolar RNA U13 Neighboring gene transcription factor NF-E4-like Neighboring gene neuroligin 1 Neighboring gene transmembrane protein 229B-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-associated protein 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    182845107..183104004 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002814293.4 → XP_002814339.1  spermatogenesis-associated protein 16

    UniProtKB/TrEMBL
    A0A2J8TIW5, H2PC12
    Related
    ENSPPYP00000015993.2
    Conserved Domains (2) summary
    sd00006
    Location:217 → 257
    TPR; TPR repeat [structural motif]
    pfam15015
    Location:5 → 567
    NYD-SP12_N; Spermatogenesis-associated, N-terminal
Nucleotide Protein
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