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MAP1LC3B microtubule associated protein 1 light chain 3 beta [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100445030, updated on 26-Mar-2024

Summary

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Gene symbol
MAP1LC3B
Gene description
microtubule associated protein 1 light chain 3 beta
Locus tag
CR201_G0036727
See related
Ensembl:ENSPPYG00000034043
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See MAP1LC3B in Genome Data Viewer
Location:
chromosome: 18
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 18 NC_072003.2 (86821966..86834554)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 16 NC_072001.1 (86235031..86246341)

Chromosome 18 - NC_072003.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112129399 Neighboring gene F-box protein 31 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene zinc finger CCHC-type containing 14 Neighboring gene uncharacterized LOC129050869 Neighboring gene uncharacterized LOC129050867 Neighboring gene uncharacterized LOC103889549

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
microtubule-associated proteins 1A/1B light chain 3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072003.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    86821966..86834554
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009251028.4 → XP_009249303.1  microtubule-associated proteins 1A/1B light chain 3B isoform X1

    See identical proteins and their annotated locations for XP_009249303.1

    UniProtKB/TrEMBL
    A0A2J8T9C9, A0A8I5YKE6
    Related
    ENSPPYP00000028694.1
    Conserved Domains (1) summary
    cd17235
    Location:5 → 119
    Ubl_ATG8_MAP1LC3B; ubiquitin-like (Ubl) domain found in microtubule associate protein 1 light chain 3B (MAP1LC3B)

  2. XM_063717798.1 → XP_063573868.1  microtubule-associated proteins 1A/1B light chain 3B isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials