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SAMM50 SAMM50 sorting and assembly machinery component [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100439945, updated on 26-Mar-2024

Summary

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Gene symbol
SAMM50
Gene description
SAMM50 sorting and assembly machinery component
Locus tag
CR201_G0031852
See related
Ensembl:ENSPPYG00000011918
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See SAMM50 in Genome Data Viewer
Location:
chromosome: 23
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 23 NC_085929.1 (50462792..50514216)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 22 NC_072007.1 (29585861..29634662)

Chromosome 23 - NC_085929.1Genomic Context describing neighboring genes Neighboring gene patatin like phospholipase domain containing 5 Neighboring gene patatin like phospholipase domain containing 3 Neighboring gene large ribosomal subunit protein eL33-like Neighboring gene parvin beta Neighboring gene transfer RNA opal suppressor (anticodon UCA) Neighboring gene parvin gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mitochondrial respiratory chain complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein insertion into mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in outer membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting and assembly machinery component 50 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085929.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    50462792..50514216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002831240.5 → XP_002831286.2  sorting and assembly machinery component 50 homolog isoform X3

  2. XM_063723104.1 → XP_063579174.1  sorting and assembly machinery component 50 homolog isoform X2

  3. XM_054543772.2 → XP_054399747.1  sorting and assembly machinery component 50 homolog isoform X1

RNA

  1. XR_010139540.1 RNA Sequence

  2. XR_010139541.1 RNA Sequence

  3. XR_010139542.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials