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HSD17B12 hydroxysteroid 17-beta dehydrogenase 12 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100439025, updated on 26-Mar-2024

Summary

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Gene symbol
HSD17B12
Gene description
hydroxysteroid 17-beta dehydrogenase 12
Locus tag
CR201_G0011003
See related
Ensembl:ENSPPYG00000003343
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See HSD17B12 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 9 NC_071994.2 (23292514..23465390, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 11 NC_071996.1 (23270169..23443049, complement)

Chromosome 9 - NC_071994.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129048627 Neighboring gene SEC14-like protein 1 Neighboring gene alkB homolog 3, alpha-ketoglutarate dependent dioxygenase Neighboring gene uncharacterized LOC129048630 Neighboring gene prohibitin 1-like Neighboring gene large ribosomal subunit protein uL23-like Neighboring gene uncharacterized LOC129048629 Neighboring gene C-terminal-binding protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain 3-oxoacyl-CoA reductase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071994.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    23292514..23465390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024254837.3 → XP_024110605.1  very-long-chain 3-oxoacyl-CoA reductase

    UniProtKB/TrEMBL
    A0A2J8WFM3, A0A2J8WFM6, A0A8I5TJ32, H2NDN2
    Related
    ENSPPYP00000003837.3
    Conserved Domains (1) summary
    cd05356
    Location:50 → 289
    17beta-HSD1_like_SDR_c; 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials