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CLEC6A C-type lectin domain containing 6A [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100437931, updated on 26-Mar-2024

Summary

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Gene symbol
CLEC6A
Gene description
C-type lectin domain containing 6A
Locus tag
CR201_G0036356
See related
Ensembl:ENSPPYG00000004240
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human all
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Genomic context

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See CLEC6A in Genome Data Viewer
Location:
chromosome: 10
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 10 NC_071995.2 (8381843..8463127)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 12 NC_071997.1 (8382712..8407918)

Chromosome 10 - NC_071995.2Genomic Context describing neighboring genes Neighboring gene NECAP endocytosis associated 1 Neighboring gene POU domain, class 5, transcription factor 1-like Neighboring gene C-type lectin domain family 4 member A Neighboring gene large ribosomal subunit protein eL15-like Neighboring gene U6 spliceosomal RNA Neighboring gene C-type lectin domain family 4 member D Neighboring gene C-type lectin domain family 4 member E Neighboring gene uncharacterized LOC129049043

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables signaling receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C-type lectin domain family 6 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071995.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    8381843..8463127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002822865.4 → XP_002822911.1  C-type lectin domain family 6 member A

    UniProtKB/TrEMBL
    A0A2J8TC26, A0A6D2WK40, H2NGE5
    Related
    ENSPPYP00000004836.1
    Conserved Domains (1) summary
    cd03590
    Location:78 → 203
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)

RNA

  1. XR_010135705.1 RNA Sequence

  2. XR_010135708.1 RNA Sequence

  3. XR_010135707.1 RNA Sequence

  4. XR_010135711.1 RNA Sequence

  5. XR_010135706.1 RNA Sequence

  6. XR_010135710.1 RNA Sequence

  7. XR_010135709.1 RNA Sequence

Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials