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SYNJ1 synaptojanin 1 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100437498, updated on 10-Oct-2024

Summary

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Gene symbol
SYNJ1
Gene description
synaptojanin 1
Locus tag
CR201_G0027324
See related
Ensembl:ENSPPYG00000011365
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See SYNJ1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 22 NC_072007.2 (42918111..43016720, complement)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 21 NC_072006.1 (37110397..37210458, complement)

Chromosome 22 - NC_072007.2Genomic Context describing neighboring genes Neighboring gene t-complex 10 like Neighboring gene cilia and flagella associated protein 298 Neighboring gene uncharacterized LOC129052367 Neighboring gene uncharacterized LOC134760811 Neighboring gene PAX3 and PAX7 binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SH3 domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphatidylinositol dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in perinuclear region of cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptojanin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_072007.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    42918111..43016720 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063720806.1 → XP_063576876.1  synaptojanin-1 isoform X5

  2. XM_054542756.2 → XP_054398731.2  synaptojanin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8UKY0

  3. XM_054542758.2 → XP_054398733.2  synaptojanin-1 isoform X7

    UniProtKB/TrEMBL
    H2P2Z6

  4. XM_063720805.1 → XP_063576875.1  synaptojanin-1 isoform X4

  5. XM_063720807.1 → XP_063576877.1  synaptojanin-1 isoform X6

  6. XM_063720804.1 → XP_063576874.1  synaptojanin-1 isoform X3

  7. XM_054542755.2 → XP_054398730.2  synaptojanin-1 isoform X1

  8. XM_024239494.3 → XP_024095262.3  synaptojanin-1 isoform X9

    UniProtKB/TrEMBL
    A0A2J8UKX0

  9. XM_054542754.2 → XP_054398729.2  synaptojanin-1 isoform X8

  10. XM_063720812.1 → XP_063576882.1  synaptojanin-1 isoform X13

    UniProtKB/TrEMBL
    A0A2J8UL08

  11. XM_063720814.1 → XP_063576884.1  synaptojanin-1 isoform X15

  12. XM_063720811.1 → XP_063576881.1  synaptojanin-1 isoform X12

  13. XM_063720809.1 → XP_063576879.1  synaptojanin-1 isoform X11

  14. XM_063720813.1 → XP_063576883.1  synaptojanin-1 isoform X14

  15. XM_063720810.1 → XP_063576880.1  synaptojanin-1 isoform X11

  16. XM_063720808.1 → XP_063576878.1  synaptojanin-1 isoform X10

Nucleotide Protein
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