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ERI3 ERI1 exoribonuclease family member 3 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100436192, updated on 10-Oct-2024

Summary

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Gene symbol
ERI3
Gene description
ERI1 exoribonuclease family member 3
Locus tag
CR201_G0041924
See related
Ensembl:ENSPPYG00000001431
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See ERI3 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 1 NC_071985.2 (188947411..189082277)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 1 NC_071985.1 (188830026..188964893)

Chromosome 1 - NC_071985.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 53 Neighboring gene ring finger protein 220 Neighboring gene U6 spliceosomal RNA Neighboring gene metaxin-3-like Neighboring gene DNA methyltransferase 1 associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ERI1 exoribonuclease 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_071985.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    188947411..189082277
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054535982.1 → XP_054391957.1  ERI1 exoribonuclease 3 isoform X6

  2. XM_054535968.1 → XP_054391943.1  ERI1 exoribonuclease 3 isoform X2

  3. XM_054535978.1 → XP_054391953.1  ERI1 exoribonuclease 3 isoform X6

  4. XM_054535997.1 → XP_054391972.1  ERI1 exoribonuclease 3 isoform X10

  5. XM_009251157.4 → XP_009249432.2  ERI1 exoribonuclease 3 isoform X10

    UniProtKB/TrEMBL
    A0A2J8SM24
    Conserved Domains (1) summary
    cd06133
    Location:68 → 245
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  6. XM_054535988.2 → XP_054391963.1  ERI1 exoribonuclease 3 isoform X7

  7. XM_024247595.3 → XP_024103363.1  ERI1 exoribonuclease 3 isoform X7

    UniProtKB/TrEMBL
    A0A2J8SM24
    Conserved Domains (1) summary
    cd06133
    Location:68 → 277
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  8. XM_024247615.3 → XP_024103383.1  ERI1 exoribonuclease 3 isoform X14

    Conserved Domains (1) summary
    cd06133
    Location:68 → 203
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  9. XM_024247633.3 → XP_024103401.1  ERI1 exoribonuclease 3 isoform X15

    Conserved Domains (1) summary
    cd06133
    Location:1 → 146
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  10. XM_024247627.3 → XP_024103395.1  ERI1 exoribonuclease 3 isoform X15

    Conserved Domains (1) summary
    cd06133
    Location:1 → 146
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  11. XM_024247570.3 → XP_024103338.1  ERI1 exoribonuclease 3 isoform X11

    UniProtKB/TrEMBL
    A0A8I5TIW1
    Conserved Domains (1) summary
    cd06133
    Location:146 → 355
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  12. XM_024247590.3 → XP_024103358.1  ERI1 exoribonuclease 3 isoform X5

    UniProtKB/TrEMBL
    A0A8I5TIW1
    Conserved Domains (1) summary
    cd06133
    Location:146 → 313
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  13. XM_024247583.3 → XP_024103351.1  ERI1 exoribonuclease 3 isoform X3

    UniProtKB/TrEMBL
    A0A2J8SM25, A0A8I5TIW1, H2N7N1
    Related
    ENSPPYP00000001659.3
    Conserved Domains (1) summary
    cd06133
    Location:146 → 323
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  14. XM_024247604.3 → XP_024103372.1  ERI1 exoribonuclease 3 isoform X8

    UniProtKB/TrEMBL
    A0A2J8SM11
    Conserved Domains (1) summary
    cd06133
    Location:146 → 281
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  15. XM_024247576.3 → XP_024103344.1  ERI1 exoribonuclease 3 isoform X1

    UniProtKB/TrEMBL
    A0A8I5TIW1
    Conserved Domains (1) summary
    cd06133
    Location:144 → 353
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  16. XM_024247589.3 → XP_024103357.1  ERI1 exoribonuclease 3 isoform X4

    UniProtKB/TrEMBL
    A0A8I5TIW1
    Conserved Domains (1) summary
    cd06133
    Location:144 → 321
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  17. XM_063719276.1 → XP_063575346.1  ERI1 exoribonuclease 3 isoform X9

  18. XM_024247613.3 → XP_024103381.1  ERI1 exoribonuclease 3 isoform X13

    UniProtKB/TrEMBL
    A0A2J8SLZ9
    Conserved Domains (1) summary
    cd06133
    Location:35 → 205
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

  19. XM_054536010.2 → XP_054391985.1  ERI1 exoribonuclease 3 isoform X14

  20. XM_024247620.2 → XP_024103388.1  ERI1 exoribonuclease 3 isoform X12

    UniProtKB/TrEMBL
    A0A2J8SM39, A0A8I5TB87
    Related
    ENSPPYP00000031225.1
    Conserved Domains (1) summary
    cd06133
    Location:11 → 170
    ERI-1_3'hExo_like; DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins
Nucleotide Protein
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