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CSPG5 chondroitin sulfate proteoglycan 5 [ Pongo abelii (Sumatran orangutan) ]

Gene ID: 100431729, updated on 10-Oct-2024

Summary

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Gene symbol
CSPG5
Gene description
chondroitin sulfate proteoglycan 5
Locus tag
CR201_G0034943
See related
Ensembl:ENSPPYG00000013916
Gene type
protein coding
RefSeq status
MODEL
Organism
Pongo abelii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
Orthologs
human mouse all
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Genomic context

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See CSPG5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 2 NC_085928.1 (106886204..106902851)
RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 3 NC_071988.1 (94667784..94684432)

Chromosome 2 - NC_085928.1Genomic Context describing neighboring genes Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit C1 Neighboring gene HIG1 domain family member 2A, mitochondrial Neighboring gene uncharacterized LOC129058265 Neighboring gene bolA-like protein 2 Neighboring gene uncharacterized LOC129058268 Neighboring gene elongator acetyltransferase complex subunit 6 Neighboring gene SREBF chaperone

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell projection morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate proteoglycan 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

Genomic

  1. NC_085928.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Range
    106886204..106902851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024244358.3 → XP_024100126.1  chondroitin sulfate proteoglycan 5 isoform X1

    UniProtKB/TrEMBL
    A0A2J8TFQ3, A0A2J8TFQ5, A0A8I5T691
    Conserved Domains (2) summary
    pfam06567
    Location:447 → 565
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
    pfam06566
    Location:33 → 272
    Chon_Sulph_att; Chondroitin sulphate attachment domain

  2. XM_024244359.3 → XP_024100127.1  chondroitin sulfate proteoglycan 5 isoform X2

    UniProtKB/TrEMBL
    A0A2J8TFQ3, A0A2J8TG43, A0A8I5T691, H2PAW3
    Related
    ENSPPYP00000015568.3
    Conserved Domains (2) summary
    pfam06567
    Location:447 → 538
    Neural_ProG_Cyt; Neural chondroitin sulphate proteoglycan cytoplasmic domain
    pfam06566
    Location:33 → 272
    Chon_Sulph_att; Chondroitin sulphate attachment domain

  3. XM_054550873.2 → XP_054406848.1  chondroitin sulfate proteoglycan 5 isoform X3

Nucleotide Protein
Heading Accession and Version

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