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SP140L SP140 nuclear body protein like [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 100424943, updated on 8-Mar-2024

Summary

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Gene symbol
SP140L
Gene description
SP140 nuclear body protein like
See related
Ensembl:ENSMMUG00000012199
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human all
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Genomic context

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See SP140L in Genome Data Viewer
Location:
chromosome: 12
Exon count:
20
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 12 NC_041765.1 (117773673..117838892)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 12 NC_027904.1 (112786991..112852245)

Chromosome 12 - NC_041765.1Genomic Context describing neighboring genes Neighboring gene SP110 nuclear body protein Neighboring gene SP140 nuclear body protein Neighboring gene SP100 nuclear antigen Neighboring gene nuclear autoantigen Sp-100-like Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear body protein SP140-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041765.1 Reference Mmul_10 Primary Assembly

    Range
    117773673..117838892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028831200.1 → XP_028687033.1  nuclear body protein SP140-like protein isoform X2

    UniProtKB/TrEMBL
    A0A5F8A7V8
    Conserved Domains (4) summary
    cd15626
    Location:424 → 465
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:319 → 392
    SAND; SAND domain
    pfam03172
    Location:49 → 147
    HSR; HSR domain
    cl02556
    Location:489 → 569
    Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.

  2. XM_028831201.1 → XP_028687034.1  nuclear body protein SP140-like protein isoform X3

    UniProtKB/TrEMBL
    A0A5F8A7V8
    Conserved Domains (3) summary
    cd15626
    Location:424 → 465
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:319 → 392
    SAND; SAND domain
    pfam03172
    Location:49 → 147
    HSR; HSR domain

  3. XM_015111318.2 → XP_014966804.1  nuclear body protein SP140-like protein isoform X1

    UniProtKB/TrEMBL
    A0A1D5R5B8
    Related
    ENSMMUP00000055505.2, ENSMMUT00000058640.2
    Conserved Domains (4) summary
    cd05501
    Location:489 → 592
    Bromo_SP100C_like; Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin ...
    cd15626
    Location:424 → 465
    PHD_SP110_140; PHD finger found in the Sp100/Sp140 family of nuclear body components
    pfam01342
    Location:317 → 392
    SAND; SAND domain
    pfam03172
    Location:52 → 146
    Sp100; Sp100 domain
Nucleotide Protein
Heading Accession and Version

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