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MIR3138 microRNA 3138 [ Homo sapiens (human) ]

Gene ID: 100423011, updated on 10-Oct-2023

Summary

Official Symbol
MIR3138provided by HGNC
Official Full Name
microRNA 3138provided by HGNC
Primary source
HGNC:HGNC:38341
See related
Ensembl:ENSG00000264931 miRBase:MI0014161; AllianceGenome:HGNC:38341
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
mir-3138
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

Location:
4p16.1
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (10078611..10078692, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (10078197..10078278, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (10080235..10080316, complement)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 9 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:10007559-10008758 Neighboring gene uncharacterized LOC124900664 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21306 Neighboring gene Sharpr-MPRA regulatory region 5160 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15274 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15275 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:10022603-10023102 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:10064967-10065581 Neighboring gene uncharacterized LOC124900665 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:10092819-10093589 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:10095904-10096674 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:10097252-10098451 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:10104010-10104700 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:10104701-10105391 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15276 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:10109091-10109822 Neighboring gene Sharpr-MPRA regulatory region 388 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:10114947-10115447 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:10117280-10118084 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15278 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15279 Neighboring gene uncharacterized LOC124900666 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21310 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21311 Neighboring gene WD repeat domain 1 Neighboring gene RNA, 5S ribosomal pseudogene 155

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036090.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC005674
    Related
    ENST00000585238.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    10078611..10078692 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    10078197..10078278 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)