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MIR3142 microRNA 3142 [ Homo sapiens (human) ]

Gene ID: 100422938, updated on 10-Oct-2023

Summary

Official Symbol
MIR3142provided by HGNC
Official Full Name
microRNA 3142provided by HGNC
Primary source
HGNC:HGNC:38297
See related
miRBase:MI0014166; AllianceGenome:HGNC:38297
Gene type
ncRNA
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
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Genomic context

Location:
5q33.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (160474444..160474525)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (161002943..161003024)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (159901451..159901532)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak5561 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23560 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23561 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23562 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16584 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16585 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:159849111-159849667 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23563 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23564 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23565 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16586 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23566 Neighboring gene SLU7 homolog, splicing factor Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23567 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:159894839-159895475 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:159894202-159894838 Neighboring gene PTTG1 regulator of sister chromatid separation, securin Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:159904496-159905044 Neighboring gene MIR3142 host gene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:159931865-159932702 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23570 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16587 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23571 Neighboring gene microRNA 146a Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:160019382-160019882 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:160033047-160034246 Neighboring gene ATPase phospholipid transporting 10B (putative) Neighboring gene ReSE screen-validated silencer GRCh37_chr5:160072012-160072167 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:160300229-160300807 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:160300808-160301385 Neighboring gene NANOG hESC enhancer GRCh37_chr5:160355657-160356158

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036095.1 RNA Sequence

    Status: PROVISIONAL

    Source sequence(s)
    AC091842

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    160474444..160474525
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    161002943..161003024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)