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TPT1P5 TPT1 pseudogene 5 [ Homo sapiens (human) ]

Gene ID: 100421420, updated on 17-Sep-2024

Summary

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Official Symbol
TPT1P5provided by HGNC
Official Full Name
TPT1 pseudogene 5provided by HGNC
Primary source
HGNC:HGNC:49296
See related
Ensembl:ENSG00000214108 AllianceGenome:HGNC:49296
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See TPT1P5 in Genome Data Viewer
Location:
5p13.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (31908361..31909183)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (32021985..32022800)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (31908467..31909289)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene PDZ domain containing 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:31853436-31854109 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:31854110-31854782 Neighboring gene uncharacterized LOC124900953 Neighboring gene OCT4 hESC enhancer GRCh37_chr5:31877194-31877695 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:31878784-31879741 Neighboring gene ribosomal protein L5 pseudogene 14 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:31889301-31889803 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:31889804-31890305 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:31892991-31893492 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:31923061-31923560 Neighboring gene mitochondrial import receptor subunit TOM7 homolog Neighboring gene microRNA 4279

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tumor protein, translationally-controlled 1 pseudogene 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_024662.1 

    Range
    101..923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    31908361..31909183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    32021985..32022800
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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