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CNTNAP3P1 CNTNAP3 pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100420787, updated on 17-Sep-2024

Summary

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Official Symbol
CNTNAP3P1provided by HGNC
Official Full Name
CNTNAP3 pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:49591
See related
AllianceGenome:HGNC:49591
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See CNTNAP3P1 in Genome Data Viewer
Location:
9q13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (62924910..62929215)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (40887528..40891831)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (66580734..66585039)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene lncRNA negative regulator of fibroblast-like synoviocyte migration, SYNCRIP interacting Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28435 Neighboring gene fibroblast growth factor 7 pseudogene 8 Neighboring gene family with sequence similarity 88 member B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:66570705-66571492 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:66571493-66572278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:66581406-66581906 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:66581907-66582407 Neighboring gene coiled-coil domain-containing protein 86-like Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr9:66950247-66950746 Neighboring gene uncharacterized LOC107987003

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • contactin associated protein-like 3 pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023920.1 

    Range
    101..4406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    62924910..62929215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    40887528..40891831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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