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LOC100420514 coiled-coil domain containing 86 pseudogene [ Homo sapiens (human) ]

Gene ID: 100420514, updated on 17-Sep-2024

Summary

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Gene symbol
LOC100420514
Gene description
coiled-coil domain containing 86 pseudogene
See related
Ensembl:ENSG00000251352
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100420514 in Genome Data Viewer
Location:
5q35.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (180671894..180672600, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (181228587..181229293, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (180098894..180099600, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901154 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:180023713-180023884 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:180029578-180030078 Neighboring gene fms related receptor tyrosine kinase 4 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr5:180046831-180048030 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:180059019-180059648 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:180059649-180060278 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:180066955-180067601 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:180069214-180069370 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:180072499-180073164 Neighboring gene long intergenic non-protein coding RNA 2222 Neighboring gene olfactory receptor family 2 subfamily AI member 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_024648.1 

    Range
    101..807
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    180671894..180672600 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    181228587..181229293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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