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LOC100420430 nipsnap homolog 2 pseudogene [ Homo sapiens (human) ]

Gene ID: 100420430, updated on 17-Sep-2024

Summary

Gene symbol
LOC100420430
Gene description
nipsnap homolog 2 pseudogene
See related
Ensembl:ENSG00000271583
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See LOC100420430 in Genome Data Viewer
Location:
2q22.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (146833501..146834038, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (147283705..147284242, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (147591069..147591606, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene OTX2 pseudogene 2 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:147296950-147297579 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:147297580-147298210 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:147298211-147298839 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:147299356-147299867 Neighboring gene uncharacterized LOC124907895 Neighboring gene poly(A) binding protein cytoplasmic 1 pseudogene 2 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:147391420-147392619 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:147578911-147579522 Neighboring gene long intergenic non-protein coding RNA 1911 Neighboring gene uncharacterized LOC107985824 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_53189 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:147705990-147706226

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023617.1 

    Range
    101..638
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    146833501..146834038 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    147283705..147284242 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)