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LOC100420008 transmembrane protein 126B pseudogene [ Homo sapiens (human) ]

Gene ID: 100420008, updated on 10-Oct-2023

Summary

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Gene symbol
LOC100420008
Gene description
transmembrane protein 126B pseudogene
See related
Ensembl:ENSG00000223368
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
9q21.13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (73871250..73873321, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (86022626..86024697, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (76486166..76488237, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:76299062-76300261 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:76365929-76366430 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:76366431-76366930 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108077 Neighboring gene RNA, 5S ribosomal pseudogene 286 Neighboring gene NANOG hESC enhancer GRCh37_chr9:76446189-76446690 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:76462239-76463020 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:76483827-76485026 Neighboring gene uncharacterized LOC105376086 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:76700163-76700726 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:76700727-76701290 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:76701291-76701854 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:76703543-76704106 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:76705756-76706342 Neighboring gene NANOG hESC enhancer GRCh37_chr9:76718090-76718591 Neighboring gene uncharacterized LOC101927329 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_108123

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_023834.1 

    Range
    101..2172
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    73871250..73873321 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    86022626..86024697 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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