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SNX18P11 sorting nexin 18 pseudogene 11 [ Homo sapiens (human) ]

Gene ID: 100419043, updated on 17-Sep-2024

Summary

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Official Symbol
SNX18P11provided by HGNC
Official Full Name
sorting nexin 18 pseudogene 11provided by HGNC
Primary source
HGNC:HGNC:39619
See related
AllianceGenome:HGNC:39619
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See SNX18P11 in Genome Data Viewer
Location:
21p11.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (9092853..9093808)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (5717103..5718058)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (9931686..9932641)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene tektin-4-like Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9922701-9922962 Neighboring gene tektin 4 pseudogene 2 Neighboring gene MPRA-validated peak4333 silencer Neighboring gene SOWAHC pseudogene 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:9988843-9989025 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr21:9999495-9999996 Neighboring gene uncharacterized LOC101930100 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:10177673-10178174 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:10178175-10178674 Neighboring gene putative ankyrin repeat domain-containing protein 20A12 Neighboring gene NCOR1 pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_025050.2 

    Range
    101..1056
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    9092853..9093808
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    5717103..5718058
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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