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PRR20G proline rich 20G [ Homo sapiens (human) ]

Gene ID: 100419008, updated on 8-Mar-2024

Summary

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Official Symbol
PRR20Gprovided by HGNC
Official Full Name
proline rich 20Gprovided by HGNC
Primary source
HGNC:HGNC:53837
See related
Ensembl:ENSG00000239620 AllianceGenome:HGNC:53837
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Orthologs
all
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Genomic context

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Location:
3q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (127283783..127288046, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (130016264..130020529, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (127002626..127006889, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 1047, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126983520-126984020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126984021-126984521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126992945-126993459 Neighboring gene uncharacterized LOC124906281 Neighboring gene NANOG hESC enhancer GRCh37_chr3:126995796-126996297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127007005-127007506 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20455 Neighboring gene long intergenic non-protein coding RNA 2016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127056419-127057078 Neighboring gene uncharacterized LOC105374094 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127110535-127111346 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127113684-127114550 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:127121540-127122739 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20456 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:127171391-127171911 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127184463-127184964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127184965-127185464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127191951-127192452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127192453-127192952 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:127212327-127213012 Neighboring gene long intergenic non-protein coding RNA 1471 Neighboring gene long intergenic non-protein coding RNA 2034

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Homology

General protein information

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Preferred Names
proline-rich protein 20G
Names
proline rich 20B pseudogene
proline rich 20B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362810.2 → NP_001349739.1  proline-rich protein 20G

    Status: VALIDATED

    Source sequence(s)
    AC133681
    Consensus CDS
    CCDS93365.1
    UniProtKB/Swiss-Prot
    P0DPQ3
    Related
    ENSP00000497409.1, ENST00000465482.3
    Conserved Domains (1) summary
    pfam15708
    Location:1 → 210
    PRR20; Proline-rich protein family 20

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    127283783..127288046 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    130016264..130020529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_025618.1: Suppressed sequence

    Description
    NG_025618.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P0DPQ3.1 GenPept UniProtKB/Swiss-Prot:P0DPQ3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials