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ACO1 aconitase 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100415290, updated on 8-Mar-2024

Summary

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Gene symbol
ACO1
Gene description
aconitase 1
See related
Ensembl:ENSCJAG00000007687
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See ACO1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 1 NC_071442.1 (136604072..136670197)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 1 NC_048383.1 (137847056..137913182)

Chromosome 1 - NC_071442.1Genomic Context describing neighboring genes Neighboring gene ATPase PAAT-like Neighboring gene ADP/ATP translocase 2-like Neighboring gene uncharacterized LOC103793513 Neighboring gene RNA sensor RIG-I Neighboring gene uncharacterized LOC128932259

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Development of the first marmoset-specific DNA microarray (EUMAMA): a new genetic tool for large-scale expression profiling in a non-human primate. Datson NA, et al. BMC Genomics, 2007 Jun 25. PMID 17592630, Free PMC Article
  2. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aconitate hydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron-responsive element binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in citrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoplasmic aconitate hydratase
Names
iron-responsive element-binding protein 1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071442.1 Reference mCalJa1.2.pat.X

    Range
    136604072..136670197
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035307488.2 → XP_035163379.1  cytoplasmic aconitate hydratase

    UniProtKB/TrEMBL
    A0A8I3X469, U3EXB6
    Conserved Domains (1) summary
    PTZ00092
    Location:2 → 889
    PTZ00092; aconitate hydratase-like protein; Provisional
Nucleotide Protein
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Gene LinkOut

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