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DCP2 decapping mRNA 2 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100415186, updated on 10-Oct-2024

Summary

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Gene symbol
DCP2
Gene description
decapping mRNA 2
See related
Ensembl:ENSCJAG00000016536
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See DCP2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 2 NC_071443.1 (93746386..93806002, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 2 NC_048384.1 (95286329..95345987, complement)

Chromosome 2 - NC_071443.1Genomic Context describing neighboring genes Neighboring gene MCC regulator of WNT signaling pathway Neighboring gene spermatogenesis-associated protein 31A7-like Neighboring gene 60S ribosomal protein L31-like Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene N-alpha-acetyltransferase 50-like Neighboring gene signal recognition particle 19 Neighboring gene receptor accessory protein 5 Neighboring gene U6 spliceosomal RNA Neighboring gene chromobox protein homolog 3-like Neighboring gene APC regulator of WNT signaling pathway

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
m7GpppN-mRNA hydrolase
Names
DCP2 decapping enzyme homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071443.1 Reference mCalJa1.2.pat.X

    Range
    93746386..93806002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054252055.1 → XP_054108030.1  m7GpppN-mRNA hydrolase isoform X4

  2. XM_054252053.1 → XP_054108028.1  m7GpppN-mRNA hydrolase isoform X1

  3. XM_003732310.5 → XP_003732358.1  m7GpppN-mRNA hydrolase isoform X5

    See identical proteins and their annotated locations for XP_003732358.1

    UniProtKB/TrEMBL
    A0A8J8Y249, F7B8L4
    Related
    ENSCJAP00000030444.2
    Conserved Domains (2) summary
    cd03672
    Location:97 → 246
    Dcp2p; mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical ...
    pfam05026
    Location:12 → 93
    DCP2; Dcp2, box A domain

  4. XM_002744706.6 → XP_002744752.1  m7GpppN-mRNA hydrolase isoform X3

    See identical proteins and their annotated locations for XP_002744752.1

    UniProtKB/TrEMBL
    F7B8L4, U3C2I7
    Related
    ENSCJAP00000030448.2
    Conserved Domains (2) summary
    cd03672
    Location:97 → 246
    Dcp2p; mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'->3' mRNA-decay pathways. Dcp2p contains an all-alpha helical ...
    pfam05026
    Location:12 → 93
    DCP2; Dcp2, box A domain

  5. XM_054252056.1 → XP_054108031.1  m7GpppN-mRNA hydrolase isoform X6

  6. XM_008991675.3 → XP_008989923.1  m7GpppN-mRNA hydrolase isoform X7

    UniProtKB/TrEMBL
    F7GSU4
    Related
    ENSCJAP00000050650.1
    Conserved Domains (1) summary
    cl00447
    Location:4 → 35
    Nudix_Hydrolase; Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ ...

  7. XM_054252054.1 → XP_054108029.1  m7GpppN-mRNA hydrolase isoform X2

RNA

  1. XR_008479596.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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